WJ. Structure determination
Wednesday, 2014-06-18, 01:30 PM
Medical Sciences Building 274
SESSION CHAIR: Isabel Peña (King's College London, London, United Kingdom)
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WJ01 |
Contributed Talk |
15 min |
01:30 PM - 01:45 PM |
P403: MILLIMETER-WAVE STUDIES OF THE ISOTOPOLOGUES OF IZnCH3(X1A1): GEOMETRIC PARAMETERS AND EVIDENCE FOR ZINC INSERTION |
MATTHEW BUCCHINO, Department of Chemistry and Astronomy, University of Arizona, Tucson, AZ, USA; JUSTIN YOUNG, PHILLIP M. SHERIDAN, Department of Chemistry and Biochemistry, Canisius College, Buffalo, NY, USA; LUCY M. ZIURYS, Department of Astronomy, University of Arizona, Tucson, AZ, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ01 |
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The laboratory detection of gas-phase IZnCH3 (X1A1), using millimeter-wave direct absorption methods, was reported previously. This work has been extended by the measurement of the pure rotational spectrum of several isotopolgues: I64ZnCH3, I66ZnCH3, I64ZnCD3, and I64Zn13CH3. These species were all created by the reaction of zinc vapor with CH3I, CD3I, or 13CH3I in the presence of a DC discharge. The zinc isotopolgues were observed in natural abundance. Rotational transitions in the range 256−293 GHz (J = 109 ← 108 to J = 132 ← 131, for K = 0 to 6) have been recorded for each species. From these measurements, an r0 structure has been determined. This structure was found to be in good agreement with previous DFT calculations. Interestingly, the 110.2° Zn – C – H bond angle of IZnCH3 is identical to that of the hydrogen substituted zinc insertion complex HZnCH3 (X1A1). These data are further evidence that IZnCH3 is not created by the generation of free radical fragments, but by the direct insertion of atomic zinc into the C – I bond of iodomethane.
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WJ02 |
Contributed Talk |
15 min |
01:47 PM - 02:02 PM |
P424: LABORATORY DETECTION OF ClZnCH3 (X1A1): FURTHER EVIDENCE FOR ZINC INSERTION |
MATTHEW BUCCHINO, Department of Chemistry and Astronomy, University of Arizona, Tucson, AZ, USA; LUCY M. ZIURYS, Department of Astronomy, University of Arizona, Tucson, AZ, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ02 |
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The pure rotational spectrum of methylzinc chloride, ClZnCH3 (X1A1), has been recorded in the gas phase using direct absorption spectroscopic techniques. ClZnCH3 was synthesized by the reaction of zinc vapor, generated in a Broida-type oven, with chloromethane in the presence of a DC discharge. Rotational transitions of the main isotopologue, 35Cl64ZnCH3, were measured in the frequency range of 260−297 GHz. The presence of clear K-ladder structure (K = 0−6) indicates that the species is a symmetric top with C3V symmetry. ClZnCH3 appears to be formed by the oxidative addition of atomic zinc to chloromethane. Searches for the 37Cl, 66Zn, 13C, and D substituted isotopologues are currently in progress. The geometries of ClZnCH3 and IZnCH3 will be compared with reactivity trends for halogen-substituted organometallic reagents.
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WJ03 |
Contributed Talk |
15 min |
02:04 PM - 02:19 PM |
P10: THE SIMPLEST CRIEGEE INTERMEDIATE (H2C=O–O):
EQUILIBRIUM STRUCTURE AND POSSIBLE FORMATION FROM ATMOSPHERIC LIGHTNING |
MICHAEL C McCARTHY, Atomic and Molecular Physics, Harvard-Smithsonian Center for Astrophysics, Cambridge, MA, USA; LAN CHENG, Department of Chemistry, The University of Texas, Austin, TX, USA; KYLE N CRABTREE, OSCAR MARTINEZ JR., Atomic and Molecular Physics, Harvard-Smithsonian Center for Astrophysics, Cambridge, MA, USA; THANH LAM NGUYEN, Department of Chemistry, The University of Texas, Austin, TX, USA; CARRIE WOMACK, Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA; JOHN F. STANTON, Department of Chemistry, The University of Texas, Austin, TX, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ03 |
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Fourier transform microwave spectroscopy in combination with double-resonance techniques has been used to detect the rotational spectra of all five singly-substituted isotopic species of H2C=O– O, the simplest Criegee intermediate. By correcting the rotational constants of these species and those of four others previously reported by Nakajima and Endo ( J. Chem. Phys. 39, 101103, 2013) for zero-point vibrational motion calculated theoretically, a highly precise equilibrium structure is reported for this important atmospheric intermediate. In contrast to the production method employed by most other groups, which has emphasized the use of halogenated percursors, we find that H2C=O– O is produced in good yield and fairly selectively by passing a mixture of methane and excess molecular oxygen through an electrical discharge. For this reason H2C=O– O may be produced in the direct vicinity of atmospheric lightning.
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WJ04 |
Contributed Talk |
15 min |
02:21 PM - 02:36 PM |
P189: MILLIMETER AND SUBMILLIMETER SPECTROSCOPIC STUDIES OF HO3 |
LUYAO ZOU, SUSANNA L. WIDICUS WEAVER, Department of Chemistry, Emory University, Atlanta, GA, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ04 |
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HO3 is a radical species of atmospheric and astrophysical chemical importance. While the microwave spectrum of this radical is known, its rotational spectrum has not been measured at higher frequencies. Studies of HO3 in the millimeter and submillimeter ranges would provide the information needed to further refine its structural determination, as well as provide additional spectroscopic guidance for observational searches. In order to study the rotational spectrum of HO3 at higher frequencies, we have coupled a pulsed supersonic expansion discharge source with a multipass direct absorption millimeter and submillimeter spectrometer. Initial experiments focused on the optimization of the HO2 radical, which has a known rotational spectrum and is the intermediate species in the production of HO3. Searches for lines of HO3 are currently underway. The spectrometer design, results of the HO2 studies, and initial results for HO3 will be presented.
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WJ05 |
Contributed Talk |
15 min |
02:38 PM - 02:53 PM |
P236: MILLIMETER-WAVE SPECTROSCOPY OF HYDRAZOIC ACID (HN3) |
BRENT K. AMBERGER, Department of Chemistry, University of Wisconsin, Madison, WI, USA; BRIAN J. ESSELMAN, R. CLAUDE WOODS, ROBERT J. McMAHON, Department of Chemistry, The Univeristy of Wisconsin, Madison, WI, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ05 |
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The rotational spectra for hydrazoic acid (HN3), its isotopologues, and its vibrational satellites have been reexamined using millimeter-wave rotational spectroscopy in the range of 240-360 GHz. Treating sodium azide (NaN3) or the commercially available singly 15N-labeled NaN3 with phosphoric acid or deuterated phosphoric acid yielded 6 different isotopologues. From these samples, we were also able to observe all of the isotopologues containing one additional 15N at natural abundance. In total, we assigned rotational transitions to 14 different species; only H15N3 and D15N3 were not accessible. With the large number of rotational constants determined for these isotopologues, an excellent equilibrium structure determination was performed with CFOUR's xrefit routine. This structure shows a bent azide sub-unit, and is in excellent agreement with the geometry optimization performed at the CCSD(T)/ANO2 level of theory. The Coriolis perturbation of the ground and first two vibrationally excited states of HN3 will also be discussed.
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WJ06 |
Contributed Talk |
15 min |
02:55 PM - 03:10 PM |
P455: PHOSPHORUS AND SILICON ANALOGS OF ISOCYANIC ACID:
FOURIER-TRANSFORM MICROWAVE SPECTROSCOPY OF HPCO AND HNSiO |
SVEN THORWIRTH, I. Physikalisches Institut, Universität zu Köln, Köln, Germany; VALERIO LATTANZI, Dep. Chemistry 'Giacomo Ciamician', University of Bologna, Bologna, Italy; MICHAEL C McCARTHY, Atomic and Molecular Physics, Harvard-Smithsonian Center for Astrophysics, Cambridge, MA, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ06 |
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By means of Fourier transform microwave spectroscopy of a supersonic jet,
the pure rotational spectra of two second-row analogs to isocyanic acid, HNCO,
have been observed for the first time. The phosphorus and silicon analogs HPCO and HNSiO,
respectively, were observed by their fundamental a-type rotational transitions (μ a(HPCO)= 0.45 D, μ a(HNSiO)= 2.10 D)
in the centimeter wave range from 10 to 32 GHz through discharges of appropriate precursor
gases highly diluted in neon.
Spectroscopic searches and identification were based on
predictions from high-level quantum-chemical calculations at the CCSD(T) level of
theory in combination with large basis sets. Excellent agreement between experimental and
calculated molecular parameters is found. In case of HPCO, the 13C isotopic species
was also observed.
Since both the stem compound HNCO and its sulphur analog HNCS are known to be present in
space, and because also a sizable number of phosphorus and silicon-bearing species were
detected there, both compounds are plausible targets for future radio astronomical
searches using sensitive radio astronomical instrumentation.
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03:12 PM |
INTERMISSION |
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WJ07 |
Contributed Talk |
15 min |
03:27 PM - 03:42 PM |
P219: BOND ANGLES AROUND A TETRAVALENT CENTRAL ATOM |
ROBERT KARL BOHN, Department of Chemistry, University of Connecticut, Storrs, CT, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ07 |
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There are several practical algorithms for building molecular geometries based on bond lengths, bond angles, and torsional angles. There seem to be few discussions of the effect changing one angle has on the remaining bond angles depending upon local symmetry. For example, in methane, CH4, the H-C-H bond angles are all tetrahedral, i.e., α = 109.4712206... deg. If one considers CH3F, a molecule with C3v symmetry, how are the H-C-F bond angles related to the H-C-H bond angles? This study derives the bond angle relationships for a 4-bonded central atom such as a saturated C atom. For a 4-bonded central atom (6 bond angles) the possible local point group symmetries are Td(0), D2d(1), C3v(1), C2v(1), D2(2), C2(3), Cs(3), and C1(4). The numbers in parentheses are the degrees of freedom, i.e., the number of angles which can be assigned arbitrary values with the remaining angles fixed by symmetry. Analytical formulas relating the bond angles for each of the eight possible symmetries are derived.
Also, formulas have been derived for the five possible symmetries of a planar 4-bonded atom, D4h(0), D2h(1), C2v(pendant, 1), C2v(trapezoid, 2), and Cs(3); the three possible structures of planar 3-bonded atoms, (D3h(0), C2v (1), and Cs(2); the three possible symmetries of pyramidal 3-bonded atoms, C3v(1), Cs(2), and C1 (3); and the trivial case of 2-bonded atoms, D∞h(0) and C2v(bent 1). There are also six distinct 4-bonded central atom structures with all the bonds directed into a hemisphere, C4v(1), C2v(2), C2(3), Cs(trapezoid 3), Cs(pendant 3), and C1(4), geometries rarely seen in molecules.
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WJ08 |
Contributed Talk |
15 min |
03:44 PM - 03:59 PM |
P438: THE CHIRPED PULSE AND CAVITY FOURIER TRANSFORM MICROWAVE (CP-FTMW AND FTMW) SPECTRUM OF BROMOPERFLUOROACETONE |
NICHOLAS FORCE, DAVID JOSEPH GILLCRIST, CASSANDRA C. HURLEY, FRANK E MARSHALL, NICHOLAS A. PAYTON, THOMAS D. PERSINGER, N. E. SHREVE, G. S. GRUBBS II, Department of Chemistry, Missouri University of Science and Technology, Rolla, MO, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ08 |
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Figure
The microwave spectrum of the molecule bromoperfluoroacetone has been measured on a newly constructed CP-FTMW spectrometer along with a FTMW spectrometer relocated from Oxford University to Missouri S&T. Rotational constants, centrifugal distortion parameters, and nuclear quadrupole coupling constants will be discussed. Comparisons to the previously studied halogen analogues perfluoroacetone 1 and chloroperfluoroacetone 2 will be discussed.
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1J.-U. Grabow, N. Heineking, and W. Stahl, Z. Naturforsch. 46a (1991) 229.
2G. Kadiwar, C. T. Dewberry, G. S. Grubbs II and S. A. Cooke, Talk RH11, 65 th International Symposium on Molecular Spectroscopy (2010).
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WJ09 |
Contributed Talk |
15 min |
04:01 PM - 04:16 PM |
P667: PERFLUOROBUTYRIC ACID AND ITS MONOHYDRATE: A CHIRPED PULSE AND CAVITY BASED FOURIER TRANSFORM MICROWAVE SPECTROSCOPIC STUDY |
JAVIX THOMAS, Department of Chemistry, University of Alberta, Edmonton, AB, Canada; AGAPITO SERRATO III, WEI LIN, Department of Chemistry, University of Texas, Brownsville, TX, USA; WOLFGANG JAEGER, YUNJIE XU, Department of Chemistry, University of Alberta, Edmonton, AB, Canada; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ09 |
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Perfluorobutyric acid (PFBA) is highly soluble in water and is a molecule of environmental importance. Rotational spectra of PFBA and its monohydrate were studied using a broadband chirped pulse and a narrow band cavity based Fourier transform microwave spectrometers and high level ab initio calculations. Extensive conformational search was performed for both the acid and its monohydrate at the MP2/6-311++G(2d,p) level of theory. Two and three conformers were predicted for PFBA and its monohydrate, respectively. One set of rotational transitions of PFBA and its mono-hydrate in each case was observed and assigned. Based on the broadband spectra obtained, one can confidently conclude that only one dominate conformer exists in each case. The orientation of the hydroxyl group in PFBA was determined using isotopic analysis. Comparison of the observed transition intensities and the calculated electric dipole moment components allowed one to identify the most stable monohydrate conformation which takes on the insertion hydrogen-bonding topology. Comparison to the shorter chain analogues, i.e. trifluoroacetic acid, perfluoropropionic acid, and their monohydrates, was made to elucidate the general trend in their conformational preference and binding topologies.
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WJ10 |
Contributed Talk |
15 min |
04:18 PM - 04:33 PM |
P61: ANALYSIS OF THE ROTATIONAL STRUCTURE IN THE HIGH-RESOLUTION IR SPECTRUM OF trans-HEXATRIENE-3-d1 |
NORMAN C. CRAIG, YIHUI CHEN, Department of Chemistry and Biochemistry, Oberlin College, Oberlin, OH, USA; THOMAS A. BLAKE, Chemical Physics, Pacific Northwest National Laboratory, Richland, WA, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ10 |
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For use in determining the semiexperimental structure of trans-hexatriene, its 3-d1 isotopologue has been synthesized and the high-resolution (0.0015 cm−1) IR spectrum has been recorded. The rotational structure in four C-type bands has been analyzed. These bands are for ν26 at 997.4, ν28 at 908.8, ν29 at 902.2, and ν32 at 678.6 cm−1, which are all out-of-plane modes. Ground state rotational constants are A0 = 0.7952226(8), B0 = 0.0446149(7), and C0 = 0.0422661(4) cm−1. The inertial defect is –0.2009 amu Å2, which confirms planarity for this molecular species. The ultimate intent of this investigation is to evaluate the degree to which the “C=C” bonds are lengthened and the sp2–sp2 “C–C” bonds are shortened in comparison with localized bonds and with butadiene.
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WJ11 |
Contributed Talk |
15 min |
04:35 PM - 04:50 PM |
P40: MOLECULAR STRUCTURE OF THE PHENYL RADICAL (C6H5) |
KYLE N CRABTREE, OSCAR MARTINEZ JR., Atomic and Molecular Physics, Harvard-Smithsonian Center for Astrophysics, Cambridge, MA, USA; JOHN F. STANTON, Department of Chemistry, The University of Texas, Austin, TX, USA; MICHAEL C McCARTHY, Atomic and Molecular Physics, Harvard-Smithsonian Center for Astrophysics, Cambridge, MA, USA; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ11 |
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Phenyl (C6H5) is the prototypical aryl radical, and is thought to be a critical intermediate for soot formation in combustion environments and a precursor to the formation of PAHs in space.
Despite the fundamental importance of this species, its molecular structure has never been measured experimentally.
We have measured the rotational spectra of C6H5 and all of its singly-substituted D and 13C isotopologues in the 170-190 and 250-270 GHz bands in a positive column discharge of dilute benzene (or C6H5D/13CC5H6) in Ar.
The experimentally determined rotational constants were combined with zero point vibrational and electronic corrections calculated at the CCSD(T) level of theory to derive the semi-experimental equilibrium structure (reemp).
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WJ12 |
Contributed Talk |
15 min |
04:52 PM - 05:07 PM |
P62: EQUILIBRIUM STRUCTURE OF PIPERIDINE |
JEAN DEMAISON, Laboratoire PhLAM, UMR 8523 CNRS - Université Lille 1, Villeneuve d'Ascq, France; HEINZ DIETER RUDOLPH, Section of Chemical Information Systems, Universität Ulm, Ulm, Germany; NORMAN C. CRAIG, Department of Chemistry and Biochemistry, Oberlin College, Oberlin, OH, USA; PATRICIA ECIJA, EMILIO J. COCINERO, Physical Chemistry Department, Universidad del País Vasco, Bilbao, Spain; ALBERTO LESARRI, Department Quimica Fisica y Quimica Inorganica, Universidad de Valladolid, Valladolid, Spain; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ12 |
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In order to determine an accurate equilibrium structure for the equatorial form of piperidine, C 5H11N, microwave transitions and ground state rotational constants are reported for the 13C and 15N isotopologues measured in natural abundance. These rotational constants along with those of the parent and ND species were used together with vibration-rotation constants obtained from a cubic force fields calculated at the B3LYP/cc-pVTZ and MP2/cc-pVTZ levels of theory to derive a semiexperimental (SE) equilibrium structure. However, the rotational constants of the CD deuterated species are not available, and there are many small Cartesian coordinates. Furthermore, piperidine is an oblate top. Quite generally, there is a large rotation of the principal axis system upon isotopic substitution in oblate tops that may considerably reduce the accuracy of the SE structure. For these reasons, the mixed estimation method was used. In this method, internal coordinates from good-quality quantum chemical calculations (with appropriate uncertainties) are fitted simultaneously with moments of inertia of the full set of isotopologues. In order to have predicates as accurate as possible, the geometry was optimized at the MP2 and CCSD(T) levels of theory using Dunning basis sets up to quadruple-zeta quality. This combination of experimental rotational constants and high-level ab initio calculations allowed us to determine an accurate equilibrium structure.
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WJ13 |
Contributed Talk |
15 min |
05:09 PM - 05:24 PM |
P299: MICROWAVE SPECTRA AND MOLECULAR GEOMETRIES OF BENZONITRILE AND PENTAFLUOROBENZONITRILE |
MAHDI KAMAEE, JENNIFER VAN WIJNGAARDEN, Department of Chemistry, University of Manitoba, Winnipeg, MB, Canada; |
IDEALS Archive (Abstract PDF / Presentation File) |
DOI: https://dx.doi.org/10.15278/isms.2014.WJ13 |
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The ground state rotational spectra of benzonitrile (BN) and pentafluorobenzonitrile (PFBN) were investigated using Balle-Flygare Fourier transform microwave (FTMW) spectroscopy in the region between 5 and 25 GHz. In addition to the parent species, transitions due to the five 13C isotopologues were measured in natural abundance and used to calculate relevant geometric parameters of the ring backbone of the two compounds. The experimental results compare well with the equilibrium structure determined via ab initio theory (MP2/6-311++G(2d,2p)). To better understand the effect of fluorination on the ring moiety, the electronic environments around the nitrogen atom in both species were compared through a Townes-Dailey-type analysis of the observed 14N quadrupole hyperfine structure.
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WJ14 |
Contributed Talk |
15 min |
05:26 PM - 05:41 PM |
P265: MICROWAVE SPECTROSCOPY OF MONOTERPENES OF ATMOSPHERIC INTEREST: α-PINENE, β-PINENE, AND NOPINONE |
JUAN-RAMON AVILES MORENO, ELIAS M. NEEMAN, T. R. HUET, Laboratoire PhLAM, UMR 8523 CNRS - Université Lille 1, Villeneuve d'Ascq, France; |
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DOI: https://dx.doi.org/10.15278/isms.2014.WJ14 |
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Several monoterpenes and terpenoids are biogenic volatile organic compounds which are emitted in the atmosphere, and react with OH, O3, NOx, etc. to give rise to several oxydation and degradation products. Spectroscopic information on these atmospheric species are still very scarse. Meanwhile we have demonstrated that combining quantum calculations to microwave spectroscopy led to the unambiguous characterization of the most stable conformers for perillaldehyde, 1 limonene and carvone.
2 This information can be used to subsequently model accurately the vibrational signature for atmospheric purposes. 3
We have recorded the pure rotational spectra of α-pinene and β-pinene ( C10H16), and of nopinone ( C9H14O), using the MB-FTMW spectrometer of Lille, in the 2-20 GHz range at temperatures varying between 340 and 380 K. For these three bicyclic molecules only one conformer can be observed, and the rotational structure was observed up to J, K a = 8, 3 ; 8, 4 ; 8, 5, respectively. All the spectra were modeled with a semi-rigid rotor Hamiltonian and fitted to obtain a rms value better than 5 kHz using a-, b- and c- type transitions.
All the experimental results were supported by several quantum calculations performed at different levels of theory (DFT and ab initio). In particular no experimental evidence of internal rotation motion was found (methyl groups), in good agreement with the calculated barriers.
Support from the French Laboratoire d'Excellence CaPPA (Chemical and Physical Properties of the Atmosphere) through contract ANR-10-LABX-0005 of the Programme d'Investissements d'Avenir is acknowledged.
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1J.-R. Aviles Moreno, F. Partal Urena, J.-J. Lopez Gonzalez and T. R. Huet, Chem. Phys. Lett. 473 (2009) 17
2J.-R. Aviles Moreno, T. R. Huet, F. Partal Urena, J.-J. Lopez Gonzalez, Struct. Chem. 24 (2013) 1163
3T. R. Huet, J.-R. Aviles Moreno, O. Pirali, M. Tudorie, F. Partal Urena, J.-J. Lopez Gonzalez, JQSRT. 113 (2012) 1261
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