TJ. Structure determination
Tuesday, 2020-06-23, 01:45 PM
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TJ01 |
Contributed Talk |
15 min |
01:45 PM - 02:00 PM |
P4230: ROTATIONAL SPECTROSCOPIC AND COMPUTATIONAL INVESTIGATION OF 2-FLUOROANILINE |
TAMANNA POONIA, JENNIFER VAN WIJNGAARDEN, Department of Chemistry, University of Manitoba, Winnipeg, MB, Canada; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ01 |
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The rotational spectrum of 2-fluoroaniline was investigated using chirped pulse and Balle-Flygare Fourier transform microwave (FTMW) spectroscopy in the 8-19 GHz range. The spectrum contains transitions due to the 13C and 15N minor isotopologues which were detected in natural abundance for the first time. The ground state r 0 geometry of 2-fluoroaniline was derived from the spectrum and compares well with the r e geometry derived from quantum chemical calculations at the B3LYP-D3BJ/cc-pVTZ level of theory. Previous room temperature microwave spectra, J. Mol. Struct.41(1977)315-317^, J. Mol. Spectrosc.114,13−22(1985)eport a tunneling splitting due to NH_2
J. Mol. Spectrosc.114,13-22(1985)r
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TJ02 |
Contributed Talk |
15 min |
02:03 PM - 02:18 PM |
P4280: SEMI-EXPERIMENTAL EQUILIBRIUM STRUCTURE (reSE) OF METHACRYLONITRILE(C4H5N) |
HOUSTON H. SMITH, SAMUEL M. KOUGIAS, DANNY J LEE, BRIAN J. ESSELMAN, R. CLAUDE WOODS, ROBERT J. McMAHON, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ02 |
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Methacrylonitrile is believed to be an astrochemically relevant molecule due to the detection of acrylonitrile (C3H3N) in Saturn’s moon, Titan, and in the interstellar medium. We synthesized methacrylonitrile via the hydrocyanation and subsequent dehydration of acetone and obtained its rotational spectrum in the 130 – 360 GHz frequency region. The main isotopologue ground state has been least-squares fit to a sextic Hamiltonian accounting for internal rotation splitting from the 3-fold symmetric methyl rotor, and resulting spectroscopic constants compare well with those previously reported. The improved determination of centrifugal distortion constants improve the spectral prediction over a broad frequency range and thus the radioastronomical search for this molecule. Additionally, a study of pyrimidine, using 16 isotopologues, demonstrated that it is possible to determine very accurate semi-experimental equilibrium structures (reSE) using multiple isotopic substitution combined with coupled-cluster calculations treating the vibration-rotation interaction and the electron mass correction. With the goal of such a structure determination for methacrylonitrile, we have analyzed the spectra of all singly-substituted heavy-atom isotopologues (13C and 15N), which were detectable at natural abundance, and least-squares fit them to sextic Hamiltonians. To obtain deuterated isotopologues, the synthesis of methacrylonitrile was modified by using partially deuterated or fully deuterated acetone to yield samples of varying deuterium incorporation. We have currently assigned the rotational spectra of 22 isotopologues, with additional isotopologues yet to be analyzed. The current reSE will be presented and compared to theoretical re structures.
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TJ03 |
Contributed Talk |
15 min |
02:21 PM - 02:36 PM |
P4313: DO YOU EVEN BENCH, BRO? |
DANIEL A. OBENCHAIN, FS-SMP, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ03 |
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In a recent publication by Kraus and Frank, J. Phys. Chem. A 2018, 122, 21, 4894-49019 computational methods were used to predict the gas-phase geometries of 16 dimers and trimers whose structures we determined using rotational spectroscopy of isotopically substituted species. The experimental data set, called NCDT16, sampled various non-covalent interaction of four categories: dispersion dominated interactions, hydrogen bonded dimers, CH…π & π…π interactions, and a general category for trimers. For each method, a least-squares structure fit of experimental rotational constants was carried out using the respective predicted geometry as input, and the mean absolute errors were used to gauge the value of the method. The top performing methods of each category, as well as an overall category, are prescribed by the authors. This represents one of the few benchmarking studies of non-covalent interactions against experimental structures in the gas-phase.
From the prescribed methods, we test the quality of the benchmarking study. With a focus specifically on CH…π interactions, we compare 7 complexes containing a halogenated methane and either acetylene or propyne (a C ≡ C bond). All compared complexes have structures determined by rotational spectroscopy. Our computational and fitting methods are outlined, and we discuss the strengths and weaknesses of such a study, with an emphasis on the benefits to spectroscopic research.
J. Phys. Chem. A 2018, 122, 21, 4894-49018
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TJ04 |
Contributed Talk |
15 min |
02:39 PM - 02:54 PM |
P4320: PROPANE ISOTOPOLOGUES: HIGH RESOLUTION SYNCHROTRON FAR-IR SPECTRA OF THE SYMMETRICALLY DEUTERATED SPECIES CH3CH2CD3, CD3CH2CD3 AND C3D8. FIRST EXPERIMENTALLY DETERMINED GROUND STATE CONSTANTS FOR THESE SPECIES |
STEPHEN J. DAUNT, ROBERT GRZYWACZ, Department of Physics \& Astronomy, The University of Tennessee-Knoxville, Knoxville, TN, USA; COLIN WESTERN, School of Chemistry, University of Bristol, Bristol, United Kingdom; BRANT E. BILLINGHURST, JIANBAO ZHAO, Materials and Chemical Sciences Division, Canadian Light Source Inc., Saskatoon, Saskatchewan, Canada; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ04 |
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Figure
We are continuing our project of obtaining high resolution vibration-rotation spectra of propane isotopologues using the Far-IR beamline at the Canadian National Synchrotron (CLS). We have already reported on all the singly 13C and singly D substituted varieties as well as the 2,2-D 2 species at previous ISMS meetings (2017-19) and in a recent paper on 2- 13C-Propane Daunt, Grzywacz, Western, Lafferty, Flaud, Billinghurst, and Hutchings, J. Mol. Structure, in press (doi:10.1016/j.molstruc.2020.127851). These studies have allowed us to determine ground state inertial and centrifugal distortion rotational constants for these molecules that have no pure rotational spectra in the literature except for the 6 lines reported by Lide D. R. Lide, J. Chem. Physics 33, 1514-1518 (1960).n 1960 of normal propane and two 13C and D versions.
In this talk we will present the high resolution spectra (0.00096 cm−1) for the CCC skeletal bendings of CH3CH2CD3, CD3CH2CD3 and C3D8. These studies have yielded corrected observed band origins Gayles and King, Spectrochim. Acta 21, 543-557 (1965); K. M. Gough, W. F. Murphy and K. Raghavachari, J. Chem. Phys. 87, 3332-3340 (1987).nd rotational constants for the three species.
Preliminary values for each species are listed here in wavenumbers. CH3CH2CD3: ν 9 = 335.664740(40), A 0 = 0.8185513(12), B 0 = 0.24400666(39), C 0 = 0.21852642(41); CD3CH2CD3: ν 16 = 306.4, A 0 = 0.711202, B 0 = 0.213021, C 0 = 0.193244; C3D8: ν 9 = 303.936065(23), A 0 = 0.58742224(42), B 0 = 0.20872437(23), C 0 = 0.18588200(18).
Footnotes:
Daunt, Grzywacz, Western, Lafferty, Flaud, Billinghurst, and Hutchings, J. Mol. Structure, in press (doi:10.1016/j.molstruc.2020.127851)..
D. R. Lide, J. Chem. Physics 33, 1514-1518 (1960).i
Gayles and King, Spectrochim. Acta 21, 543-557 (1965); K. M. Gough, W. F. Murphy and K. Raghavachari, J. Chem. Phys. 87, 3332-3340 (1987).a
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TJ05 |
Contributed Talk |
15 min |
02:57 PM - 03:12 PM |
P4327: ELECTRONIC STRUCTURE ANALYSIS OF GROUND AND EXCITED STATES OF MO2+/+/0/− (M = Mo, Ru) AND THEIR WATER ACTIVATION STRENGTHS |
ISURU R. ARIYARATHNA, Chemistry, Auburn University, Auburn, AL, USA; EVANGELOS MILIORDOS, Chemistry and Biochemistry, Auburn University, Auburn, AL, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ05 |
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Production of H 2 gas via water splitting reactions facilitated by solar light harvesting, can be a solution to the constant increase of energy demand. Water splitting is an endothermic process which requires about 2.69 eV per water molecule. High endothermicity of this process can be overcome by exploiting the sun light and using a suitable catalyst. Transition metal oxide (MO) catalysts are promising candidates for this process because of their multiple low-lying electronic states.
The rate determining step in the water splitting reactions is often the activation of the O-H bonds. Here we have tested water activation strengths of several neutral and charged MOs computationally. The complicated electronic structures of these MOs forced us to perform multi-reference calculations. For these MOs the water activation process can be partitioned into three major processes. 1) Formation of the H 2O…OM interacting complex. 2) Surpass the transition state barrier which involve H-O bond cleavage of metal bound water. 3) HO-M-OH product formation.
Due to the multiple low-lying excited states of these species, spin crossovers and electron excitation from ground to higher states are expected. Among the considered H 2O+[MoO] −/+/2+ reactions, the anionic system is the best candidate for the water activation, which has a lower activation energy barrier and create a more stabilized product than interacting complex. On the contrary, MoO 2+/+ stabilizes the MoO 2+/+…H 2O interacting complex over products. A similar pattern was observed for the H 2O+[RuO] −/0/+/2+ reactions. The suitability of RuO species for the water activation vary in RuO 2+ < RuO + < RuO < RuO − order.
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TJ06 |
Contributed Talk |
15 min |
03:15 PM - 03:30 PM |
P4349: THE ROTATIONAL SPECTRUM OF 1,1-DIIODOETHANE AND NUCLEAR QUADRUPOLE COUPLING DUE TO THE PRESENCE OF TWO IODINE NUCLEI |
MICHAEL J. CARRILLO, WEI LIN, Department of Chemistry, University of Texas Rio Grande Valley, Brownsville, TX, USA; YASUKI ENDO, Department of Applied Chemistry, National Yang Ming Chiao Tung University, Hsinchu, Taiwan; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ06 |
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Only a few molecules with two iodine atoms have been studied using rotational spectroscopy probably due to the complex hyperfine splitting structure arising from the presence of two iodine nuclei. We report the high resolution rotational spectroscopic observation of the 1,1-diiodoethane for the first time. The spectrum was observed at 11-18 GHz frequency range in a jet-pulsed cavity-based Fourier transform microwave spectrometer. The observed transition frequencies were analyzed to yield the rotational constants, centrifugal distortion constants, the nuclear quadrupole coupling constants, and nuclear-spin rotation constants. The analysis was aided by quantum chemical calculations. Ab initio calculations were carried out at the CCSD(T) level along with the aug-cc-pVTZ-pp basis set, in order to help predict the molecular geometry. A single point calculation at MP2 level was performed to calculate the hyperfine parameters.
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TJ07 |
Contributed Talk |
15 min |
03:33 PM - 03:48 PM |
P4356: NARROWING DOWN THE POSSIBLE GEOMETRIES OF A MOLECULE FROM ISOTOPOLOGUE ROTATIONAL CONSTANTS WITH STRUCTURAL FILTERS |
JIEYU YAN, DAVID PATTERSON, Physics, University of California, Santa Barbara, CA, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ07 |
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A computer algorithm is developed to narrow down the list of possible structural geometries of a molecule from the analysis of its isotopologue rotational constants. Based on Kraitchman's equation, the absolute values of the position coordinates of the atoms in a molecule may be obtained from the corresponding isotopologue rotational constants. The algorithm, in attempt to take a step further, narrows down the list of possible combinations of atom positions and bond connections within the molecule. Compared to a previous work by Mayer et al. Mayer, Kevin J., et al. "The Feasibility of Determining the Carbon Framework Geometry of a Molecule from Analysis of the CARBON-13 Isotopologue Rotational Spectra in Natural Abundance." 74th International Symposium on Molecular Spectroscopy. 2019.hich focused on carbon atoms, the algorithm extends the application to more atoms including oxygen, nitrogen, etc. More molecular geometry filters are integrated in the algorithm as well. Five filters involving interatomic distance, bond type, valence, bond angles, and coplanarity based on VSEPR theory are developed. As a result, the algorithm was able to narrow down the number of possible structures for Aspirin, a molecule with 13 non-hydrogen atoms, from 10 10 to 110. However, the exact geometry of molecules could not be determined by the algorithm directly, especially when the molecule is large (usually more than five non-hydrogen atoms). In addition, large errors from Kraitchman's equation near the principle axes of the molecule leads to ambiguous results on those atoms. It leads to the belief that our current understanding may be insufficient to resolve the molecular geometry directly from the isotopologue rotational constants.
Footnotes:
Mayer, Kevin J., et al. "The Feasibility of Determining the Carbon Framework Geometry of a Molecule from Analysis of the CARBON-13 Isotopologue Rotational Spectra in Natural Abundance." 74th International Symposium on Molecular Spectroscopy. 2019.w
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TJ08 |
Contributed Talk |
15 min |
03:51 PM - 04:06 PM |
P4390: THE CO2 MOLECULE IS NEVER LINEAR |
PER JENSEN, Faculty of Mathematics and Natural Sciences, University of Wuppertal, Wuppertal, Germany; MICHAEL SPANNER, PHIL BUNKER, Steacie Laboratory, National Research Council of Canada, Ottawa, ON, Canada; |
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DOI: https://dx.doi.org/10.15278/isms.2020.TJ08 |
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In spectroscopic parlance, a linear triatomic molecule is one whose potential energy minimum occurs at
a linear geometry. We have recently discussed T. Hirano, U. Nagashima, P. Jensen, H. Li, Journal of Molecular Spectroscopy 362 (2019) 29-36. URL https://doi.org/10.1016/j.jms.2019.05.005; P. Jensen, Canadian Journal of Physics (2020). URL https://doi.org/10.1139/cjp-2019-0395, and references therein.ow any linear triatomic molecule will be observed as being bent on ro-vibronic average in any ro-vibronic state.
To provide further support for this idea we make here an ab initio calculation of the bending distribution functions for low lying vibrational states of the CO 2 molecule (which is well known to be linear in the sense mentioned above) in its ground electronic state. These functions have their maximum values at a non-linear geometry, and the value zero at linearity, despite the fact that the potential surface has its minimum value at linearity. They are in accord with experimental distribution functions inferred by analysis of Coulomb Explosion Imaging experiments. B. Siegmann, U. Werner, H. O. Lutz, R. Mann, Journal of Physics B: Atomic, Molecular and Optical Physics 35(17) (2002) 3755-3765. URL https://doi.org/10.1088%2F0953-4075%2F35%2F17%2F311; J. P. Brichta, S. J. Walker, R. Helsten, J. H. Sanderson, Journal of Physics B: Atomic, Molecular and Optical Physics 40(1) (2006) 117-129. URL https://doi.org/10.1088%2F0953-4075%2F40%2F1%2F011.hus in a femto-second `snapshot' of a room temperature ensemble of gas phase rotating-vibrating CO 2 molecules, none would be linear.
The same can be said for any triatomic molecule or, for that matter, for any chain molecule with a linear equilibrium structure.
Footnotes:
T. Hirano, U. Nagashima, P. Jensen, H. Li, Journal of Molecular Spectroscopy 362 (2019) 29-36. URL https://doi.org/10.1016/j.jms.2019.05.005; P. Jensen, Canadian Journal of Physics (2020). URL https://doi.org/10.1139/cjp-2019-0395, and references therein.h
B. Siegmann, U. Werner, H. O. Lutz, R. Mann, Journal of Physics B: Atomic, Molecular and Optical Physics 35(17) (2002) 3755-3765. URL https://doi.org/10.1088%2F0953-4075%2F35%2F17%2F311; J. P. Brichta, S. J. Walker, R. Helsten, J. H. Sanderson, Journal of Physics B: Atomic, Molecular and Optical Physics 40(1) (2006) 117-129. URL https://doi.org/10.1088%2F0953-4075%2F40%2F1%2F011.T
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TJ09 |
Contributed Talk |
15 min |
04:09 PM - 04:24 PM |
P4424: AB INITIO CALCULATIONS ON ROTATIONAL CONSTANT AND AVERAGED C-H(D) BOND LENGTHS OF BENZENE |
TSUNEO HIRANO, Department of Chemistry, Ochanomizu University, Tokyo, Japan; UMPEI NAGASHIMA, , Foundation for Computational Science, Kobe, Japan; MASAAKI BABA, Division of Chemistry, Graduate School of Science, Kyoto University, Kyoto, Japan; |
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DOI: https://dx.doi.org/10.15278/isms.2020.TJ09 |
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Rotational constants in the ground states of benzene and its deuterated isotopologues
were accurately determined by high-resolution spectroscopy [1]. It was demonstrated
that the averaged bond length r 0,eff(C-H) is approximately identical
to the r 0,eff(C-D).
Bearing in mind that the experimentally observed rotational constants correspond
to the averaged ro-vibrating structure projected onto each principal axis [2],
we discussed this finding in terms of wavefunction for the local modes derived
from the CCSD(T)/[aVQZ (C, H)] ab initio potential energy surface.
Due to the anharmonicity in the C-H stretching motion, r str,0(C-H) is calculated to be
longer than r str,0(C-D) by 0.0024 Å. Since the vibrationally averaged projection-angle of the C-H(D) bond
with respect to the principal axis is larger for the C-H bond (having lighter H atom) than the C-D bond,
the projected bond-lengths r proj,0(C-H) in the out-of-plane and in-plane bending motions
become shorter than r proj,0(C-D) by 0.0017 Å and 0.0011 Å, respectively.
Thus, in the sum of r str,0 and r proj,0,
the difference in r 0,eff(C-H) and r 0,eff(C-D) becomes negligibly small value of 0.0004 Å,
which explains why we observed r 0,eff(C-H) ≈ r 0,eff(C-D).
[1] S. Kunishige, M. Baba, et al., J. Chem. Phys., 143, 244302 (2015).
[2] T. Hirano, U. Nagashima, and M. Baba, J. Mol. Spectrosc., in press.
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TJ10 |
Contributed Talk |
15 min |
04:27 PM - 04:42 PM |
P4445: MICROWAVE SPECTRA AND MOLECULAR STRUCTURES OF ARGON-CIS-1,3,3,3-TETRAFLUORO-1,2-EPOXYPROPANE AND ARGON-OXIRANYLMETHANOL |
HELEN O. LEUNG, MARK D. MARSHALL, SONA KIM, JONAH R. HOROWITZ, DEVON J. STUART, Chemistry Department, Amherst College, Amherst, MA, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ10 |
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Connected to our efforts in characterizing substituted oxiranes for use as potential chiral tags for the conversion of enantiomeric molecules into spectroscopically distinct diastereomeric complexes for chiral analysis, we are exploring how argon binding to these species is modulated by varying the identity of the substituents on the epoxy ring. Previously studied systems generally showed close contacts primarily to atoms contained in the ring, but in complexes with cis-1,3,3,3-tetrafluoro-1,2-epoxypropane and oxiranylmethanol, multiple minima of similar energies are predicted by quantum chemistry calculations, including some with significant interactions between the argon atom and substituent atoms. Progress on assigning and analyzing the spectra of these complexes will be reported.
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TJ11 |
Contributed Talk |
15 min |
04:45 PM - 05:00 PM |
P4454: THE AMINO ALCOHOL PROLINOL: A ROTATIONAL STUDY |
ELENA R. ALONSO, ARAN INSAUSTI, CAMILLA CALABRESE, EMILIO J. COCINERO, Departamento de Química Física, Universidad del País Vasco (UPV-EHU), Bilbao, Spain; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.TJ11 |
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r0pt
Figure
The amino alcohol prolinol is a reduction product of the chiral amino acid proline, which is widely used as a chiral auxiliary in noted reactions. Up to date, only IR data for prolinol is available. J.J. Lee, S. Hesse, M.A. Suhm. Journal of Molecular Structure, 2010, 976, 397–404ere, we report the first high-resolution microwave study of this system. Two endo-like and exo-like conformations stabilized by strong intramolecular hydrogen bonds O-H···N have been detected in the supersonic expansion of our CP-FTMW technique. I. Uriarte, C. Pérez, E. Caballero-Mancebo, F. J. Basterretxea, A. Lesarri, J. A. Fernández and E. J. Cocinero, Chem. - A Eur. J., 2017, 23, 7156^, C. Calabrese, W. Li, G. Prampolini, L. Evangelisti, I. Uriarte, I. Cacelli, S. Melandri,and E. J. Cocinero, Angew.Chem., 2019, 131,8525–8530hese structures have been successfully identified by comparison of the experimental rotational and ^14N nuclear quadrupole coupling constants with those predicted theoretically. Given the high sensitivity reached in our experiment, the seven monosubstituted species of ^13C, ^15N and ^18O have also been observed in their natural abundance for both conformers, and the corresponding r_s
C. Calabrese, W. Li, G. Prampolini, L. Evangelisti, I. Uriarte, I. Cacelli, S. Melandri,and E. J. Cocinero, Angew.Chem., 2019, 131,8525–8530T
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