WJ. Structure determination
Wednesday, 2020-06-24, 01:45 PM
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WJ01 |
Contributed Talk |
15 min |
01:45 PM - 02:00 PM |
P4475: DETERMINING THE STRUCTURE OF 2-BROMO-1,1,1,2-TETRAFLUOROETHANE THROUGH RUDOLPH'S DOUBLE SUBSTITUTION METHOD |
JOSHUA E. ISERT, FRANK E MARSHALL, Department of Chemistry, Missouri University of Science and Technology, Rolla, MO, USA; WILLIAM C. BAILEY, Department of Chemistry-Physics, Kean University (Retired), Union, NJ, USA; G. S. GRUBBS II, Department of Chemistry, Missouri University of Science and Technology, Rolla, MO, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ01 |
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r0pt
Figure
In a talk at the 74th Annual ISMS, the structure that had determined through traditional rotational spectroscopy utilizing CP-FTMW techniques for the title molecule was presented. Based on questions received at this presentation, it was decided that the structure needed to be better refined to resolve issues with the bond lengths found using Kraitchman's Single Substitution method. In order to achieve this goal, H.D. Rudolph's Double Substitution method was utilized. This presentation will describe what went wrong when using Kraitchman's substitution, and how Rudolph's method could be adapted for future structure determinations involving complex coordinates.
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WJ02 |
Contributed Talk |
15 min |
02:03 PM - 02:18 PM |
P4515: MICROWAVE SPECTRUM OF ACETOHYDROXAMIC ACID: A GLYCINE ISOMER |
MIGUEL SANZ NOVO, IKER LEÓN, SANTIAGO MATA, JOSÉ L. ALONSO, Grupo de Espectroscopia Molecular, Lab. de Espectroscopia y Bioespectroscopia, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid, Spain; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ02 |
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We here present the first microwave study of acetohydroxamic acid (CH 3CONHOH), a glycine isomer, using a broadband chirped pulse FTMW spectrometer equipped with a laser ablation vaporization system (LA-CP-FTMW) L. Kolesniková, I. León, E. R. Alonso, S. Mata, J. L. Alonso, J. Phys. Chem. Lett., 10 (2019), 1325-1330. We have characterized two distinct structures (Z-amide and E-amide) of acetohydroxamic acid in the supersonic expansion. Accurate experimental values of the 14N nuclear quadrupole coupling constants together with the rotational constants and also the barrier to the internal rotation (V 3) of the methyl group have been provided for both conformers. The precise spectroscopic information provided here could be relevant to guide readioastronomical searches of acetohydroxamic acid in the ISM. M. Sanz-Novo acknowledges funding from the Spanish “Ministerio de Ciencia, Innovación y Universidades” under predoctoral FPU Grant (FPU17/02987).html:<hr /><h3>Footnotes:
L. Kolesniková, I. León, E. R. Alonso, S. Mata, J. L. Alonso, J. Phys. Chem. Lett., 10 (2019), 1325-1330..
M. Sanz-Novo acknowledges funding from the Spanish “Ministerio de Ciencia, Innovación y Universidades” under predoctoral FPU Grant (FPU17/02987).
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WJ03 |
Contributed Talk |
15 min |
02:21 PM - 02:36 PM |
P4527: LASER-ABLATED JET COOLED ROTATIONAL SPECTRA OF LARGE MOLECULES: TESTOSTERONE AND BARBARALONES |
IKER LEÓN, Grupo de Espectroscopia Molecular, Lab. de Espectroscopia y Bioespectroscopia, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid, Spain; ELENA R. ALONSO, Departamento de Química Física, Universidad del País Vasco (UPV-EHU), Bilbao, Spain; MAURO MATO, Department of Analytical and Organic Chemistry, Universidad Rovira i Virgili, Tarragona, Spain; MIGUEL SANZ NOVO, SANTIAGO MATA, Grupo de Espectroscopia Molecular, Lab. de Espectroscopia y Bioespectroscopia, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid, Spain; ANTONIO M ECHAVARREN, Department of Analytical and Organic Chemistry, Universidad Rovira i Virgili, Tarragona, Spain; JOSÉ L. ALONSO, Grupo de Espectroscopia Molecular, Lab. de Espectroscopia y Bioespectroscopia, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid, Spain; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ03 |
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For most people, the name 17β-Hydroxyandrost-4-en-3-one probably means nothing. When its common name “testosterone” is used instead, one of the most important steroids comes to one’s mind. We have vaporized the solid testosterone by laser ablation, and one conformer has been characterized using chirped-pulse Fourier transform microwave LA-CP-FTMW spectroscopy. The detection of such a large biomolecule highlights the actual sensitivity of rotational spectroscopy combined with laser ablation to tackle large molecules with high melting points. To confirm such an improvement, we will also report the results of 1-(4-tert-Butyl)phenyl)tricyclo[3.3.1.02,8]nona-3,6-dien-9-one, a large fluxional molecule that is central to the understanding of the phenomena of valence tautomerism.
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WJ04 |
Contributed Talk |
15 min |
02:39 PM - 02:54 PM |
P4608: STRUCTURE OF THE MODEL GRIGNARD-TYPE REAGENT ClZnCH3 (~X1A1) BY MILLIMETER-WAVE SPECTROSCOPY |
MARK BURTON, Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, USA; NAZIFA TABASSUM, Department of Molecular and Cellular Biology, University of Arizona, Tucson, AZ, USA; LUCY M. ZIURYS, Department of Chemistry and Biochemistry; Department of Astronomy, Arizona Radio Observatory, University of Arizona, Tuscon, AZ, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ04 |
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Pure rotational spectra of the 37ClZnCH3, ClZnCD3, and ClZn13CH3 isotopologues of monomeric ClZnCH3 (~X1A1) have been recorded using millimeter-wave direct absorption techniques in the frequency range 263 – 303 GHz. These species were synthesized in the gas phase in a DC discharge by the reaction of zinc vapor, produced in a Broida-type oven, with 37ClCH3 (in natural chlorine abundance), ClCD3, or Cl13CH3. The data for each isotopologue were analyzed with a symmetric top Hamiltonian and rotational and centrifugal constants determined. In combination with previous measurements of Cl64ZnCH3, Cl66ZnCH3, and Cl68ZnCH3, an rm(2) structure was determined for this organozinc compound. The bond lengths were calculated to be rCl−Zn = 2.0831(1) Å, rZn−C = 1.9085(1) Å, and rC−H = 1.1806(5) Å. The H-C-H bond angle was found to be 110.5° – slightly larger than that in methane. These data serve to benchmark future structure calculations of organozinc compounds, which are widely used in organic synthesis.
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WJ05 |
Contributed Talk |
15 min |
02:57 PM - 03:12 PM |
P4618: A ROTATIONAL STUDY OF ALAALA DIPEPTIDE |
IKER LEÓN, Grupo de Espectroscopia Molecular, Lab. de Espectroscopia y Bioespectroscopia, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid, Spain; ELENA R. ALONSO, Departamento de Química Física, Universidad del País Vasco (UPV-EHU), Bilbao, Spain; SANTIAGO MATA, JOSÉ L. ALONSO, Grupo de Espectroscopia Molecular, Lab. de Espectroscopia y Bioespectroscopia, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid, Spain; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ05 |
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The solid AlaAla dipeptide (m.p. 285ºC) has been placed in the gas phase by laser ablation and studied using a chirped-pulse Fourier-transform microwave (LA-CP-FTMW) and molecular-beam Fourier-transform micro-wave (LA-MB-FTMW) spectroscopies. Two rotamers have been identified through their rotational and nuclear quadrupole coupling constants. The two conformers are stabilized by a different type of intramolecular interactions forming closing five- and seven-membered ring configurations. Additionally, conformer interconversion gives rise to missing conformers in the conformational landscape.
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WJ06 |
Contributed Talk |
15 min |
03:15 PM - 03:30 PM |
P4623: MOLECULAR HYDROGEN COMPLEXATION WITH POLYCYCLIC AROMATIC HYDROCARBONS |
AMANDA STEBER, CRISTOBAL PEREZ, FS-SMP, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany; DANIËL RAP, FELIX Laboratory, Institute for Molecules and Materials (IMM), Radboud University, Nijmegen, Netherlands; MELANIE SCHNELL, FS-SMP, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ06 |
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There is speculation about the role that polycyclic aromatic hydrocarbons (PAHs) play in the generation of molecular hydrogen in the interstellar medium (ISM). As gas phase reactions cannot explain the rate of formation of H2 in the ISM, the community is looking to grain surface interactions. On these surfaces, H atoms would interact with PAHs through either physisorption or chemisorption. Upon contact with another H atom, molecular hydrogen would be formed and released. We aim to study the interaction H2 would have with a PAH by using rotational spectroscopy to investigate the structure of these complexes. Two PAHs, acenaphthene and fluorene, have been complexed with H2, D2, and HD in order to accurately determine the structure of the van der Waals complexes formed.
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WJ07 |
Contributed Talk |
15 min |
03:33 PM - 03:48 PM |
P4634: SEMI-EXPERIMENTAL EQUILIBRIUM STRUCTURE OF 1H- AND 2H-1,2,3-TRIAZOLES (C2H3N3) |
MARIA ZDANOVSKAIA, BRIAN J. ESSELMAN, SAMUEL M. KOUGIAS, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; JOHN F. STANTON, Quantum Theory Project, University of Florida, Gainesville, FL, USA; R. CLAUDE WOODS, ROBERT J. McMAHON, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ07 |
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1H-1,2,3-triazole (Cs; κ = 0.94; μa = 4.1 D, μb = 1.6 D) and 2H-1,2,3-triazole (C2v; κ = 0.82; μb = 0.52 D) are tautomers (C2H3N3), the former of which is formally the product of a 1,3-dipolar cycloaddition of two explosive compounds, hydrazoic acid and acetylene. We have analyzed the rotational spectra of these tautomers in the 130 – 360 GHz frequency range and least-squares fit the observed transitions to sextic Hamiltonians with low error (σ < 50 kHz). While 13C and 15N isotopologues have been observed at natural abundance and similarly analyzed, several synthetic techniques had to be employed to access deuterium-substituted isotopologues. The rotational constants of the numerous isotopologues, along with vibration-rotation interaction and electron mass corrections predicted using coupled-cluster and density functional theories, have been used to determine highly precise semi-experimental equilibrium structures (reSE) of the 1,2,3-triazoles. Equilibrium structures calculated at the above-mentioned levels of theory, as well as a computational prediction using basis set extrapolation and additional corrections for the 2H structure, are compared to the semi-experimental structures.
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WJ08 |
Contributed Talk |
15 min |
03:51 PM - 04:06 PM |
P4636: PRECISE SEMI-EXPERIMENTAL EQUILIBRIUM STRUCTURES OF SULFUR-CONTAINING HETEROCYCLES: THIOPHENE (C4H4S) AND THIAZOLE (C3H3NS) |
BRIAN J. ESSELMAN, VANESSA L. ORR, MARIA ZDANOVSKAIA, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; YOTARO ICHIKAWA, Department of Physics, University of Toyama, Toyama, Japan; AATMIK R. PATEL, Department of Chemistry, Lawrence University, Appleton, WI, USA; SAMUEL M. KOUGIAS, LAURA S. SOWIN, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; KAORI KOBAYASHI, Department of Physics, University of Toyama, Toyama, Japan; JOHN F. STANTON, Quantum Theory Project, University of Florida, Gainesville, FL, USA; R. CLAUDE WOODS, ROBERT J. McMAHON, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ08 |
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As has recently been demonstrated with pyrimidine, using multiple isotopic substitution combined with coupled-cluster calculations treating the vibration-rotation interaction and the electron mass, it is possible to determine highly precise semi-experimental equilibrium structures (reSE). The CCSD(T)/cc-pCV5Z equilibrium structure of pyrimidine agrees with the reSE structure within the 2σ uncertainties for all parameters. With the intent of improving the structure determinations of thiophene (8 – 360 GHz) and thiazole (130 -360 GHz), spectra have been collected. For each molecule, the main isotopologue vibrational ground state spectrum has been fit to a sextic Hamiltonian with low error (σ < 35 kHz). All heavy atom isotopologues (34S, 13C, 15N, 33S) were detectable at natural abundance and similarly fit to sextic Hamiltonians. To obtain many more isotopologues, several deuteration strategies were employed: 1) acid-catalyzed H/D exchange, 2) base-catalyzed H/D exchange, and 3) lithium-halogen exchange using brominated forms of these species with subsequent addition of D2O. These samples have resulted in a total of over two dozen isotopologues for each of the sulfur-containing heterocycles, including multiple substitutions of each atom. The resulting reSE structures will be discussed, including an exploration of the number of isotopologues to sufficiently determine all parameters, computational treatment of the rotational constants, and comparison to theoretical re structures containing sulfur. With pyrimidine, these structure determinations set a new standard of accuracy and precision for semi-experimental equilibrium structures (reSE).
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WJ09 |
Contributed Talk |
15 min |
04:09 PM - 04:24 PM |
P4649: DETERMINATION OF SUBSTITUTION EFFECTS ON THE STRUCTURES OF 2-, 3-, AND 4-PICOLYLAMINE USING FOURIER TRANSFORM MICROWAVE SPECTROSCOPY |
RYAN G BIRD, CALEB B SHIERY, KAYLEE X SHOOK, Chemistry, University of Pittsburgh Johnstown, Johnstown, PA, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ09 |
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This is a continued discussion regarding the substitution effectcts on the three-dimensional shape and electron distribution of three methylamine substituted pyridines, 2-, 3-, and 4-picolylamine. The microwave spectra of all three molecules were collected over the frequency range of 4-18 GHz. In addition, the 13C and 15N isotopologues, along with the deuterated amine groups, were collected for each molecule in natural abundance. From these spectra, exact structures were determined which allowed for accurate rotation of the quadruple constants from the molecular frame into an internal axis. Next, an extended Townes and Dailey analysis was used to determine the lone pair density around each nitrogen and then compared to those of benzylamine and pyridine. Results of this analysis and how it explains the configuration of the methylamine group in each of the picolylamines will be discussed.
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WJ10 |
Contributed Talk |
15 min |
04:27 PM - 04:42 PM |
P4667: PROGRESS MADE TOWARDS CONTEXT-FREE MOLECULAR STRUCTURE DETERMINATION FROM ISOTOPOLOGUE ROTATIONAL SPECTROSCOPY |
LIA YEH, DYLAN FINESTONE, Physics, University of California, Santa Barbara, CA, USA; LINCOLN SATTERTHWAITE, Chemistry and Biochemistry, UCSB, Santa Barbara, CA, USA; JIEYU YAN, DAVID PATTERSON, Physics, University of California, Santa Barbara, CA, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ10 |
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Recent algorithms N.A. Seifert et. al., Journal of Molecular Spectroscopy 312, 13 (2015).
L. Yeh, L. Satterthwaite, and D. Patterson, The Journal of Chemical Physics 150, 204122 (2019) have demonstrated context-free assignment of rotational constants-needing no knowledge of the chemical species other than the rotational spectrum.
Efforts to date to subsequently determine molecular structure require further information including assignment of singly-substituted isotopologues J. Yan and D. Patterson. Submitted to the 75th International Symposium on Molecular Spectroscopy (2020).
K. Mayer et. al., Proceedings of the 74th International Symposium on Molecular Spectroscopy (2019)., mass spectroscopy d, and data mining dM. Muckle, A. Mikhonin, D. McDaniel, and/or J. Neill, Proceedings of the 74th International Symposium on Molecular Spectroscopy (2019).
We investigate two methodologies to resolve sign ambiguities of Kraitchman’s substitution coordinates.
The first methodology requires candidate rotational constants of doubly-substituted isotopologues.
Given many such candidates, we have worked out how to determine 1) which candidates for singly- and doubly-substituted isotopologues are most probable, and 2) doubly-substituted atoms’ relative position octant. This is realizable given resolution of doubly-substituted species in natural abundance, which is 10-100x order of magnitude above our instrument's present signal to noise.
The second methodology requires precision measurement of the electric dipole moments and magnetic g-factors of both the parent and singly-substituted isotopologues. The magnetic g-factor is measured via application of a large magnetic field to our microwave spectrometer, as done by Flygare et. al. (1969).
For a 6 carbon molecule, this could be realized given the ability to resolve a ≈ 10 −5 percent difference between magnetic g-factors of the parent and singly-substituted isotopolog species, as well as resolve the electric dipole moment to 4 or 5 significant figures.
Improving the capabilities of microwave spectrometers to within these thresholds would therefore enable context-free molecular structure determination.
Footnotes:
N.A. Seifert et. al., Journal of Molecular Spectroscopy 312, 13 (2015).
Footnotes:
J. Yan and D. Patterson. Submitted to the 75th International Symposium on Molecular Spectroscopy (2020).
Footnotes:
M. Muckle, A. Mikhonin, D. McDaniel, and/or J. Neill, Proceedings of the 74th International Symposium on Molecular Spectroscopy (2019)..
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WJ11 |
Contributed Talk |
15 min |
04:45 PM - 05:00 PM |
P4700: A MICROWAVE STUDY OF THREE BROMINE-CONTAINING MOLECULES: CBr2F2, AgBr, and H2 AgBr |
JOSHUA A. SIGNORE, CHRISTOPHER FALLS, Department of Chemistry, Wesleyan University, Middletown, CT, USA; DANIEL A. OBENCHAIN, FS-SMP, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany; COREY J EVANS, Department of Chemistry, University of Leicester, Leicester, United Kingdom; WALLACE C. PRINGLE, Department of Chemistry, Wesleyan University, Middletown, CT, USA; S. A. COOKE, Natural and Social Science, Purchase College SUNY, Purchase, NY, USA; STEWART E. NOVICK, Department of Chemistry, Wesleyan University, Middletown, CT, USA; |
IDEALS Archive (Abstract PDF) |
DOI: https://dx.doi.org/10.15278/isms.2020.WJ11 |
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In preparation for our FTMW study of the complex between hydrogen and silver bromide, H 2 AgBr, we have investigated the microwave spectra of our source of bromine, dibromodifluoromethane, CBr 2F 2. Previous sources of bromine to produce AgBr proved either too damaging to the instrumentation in the long term (Br 2), or did not produce enough AgBr to be useful (CHBr 3). In addition, silver bromide, originally studied by Hoeft, Lovas, Tiemann, and Torring in 1971, J. Hoeft, F. J. Lovas, E. Tiemann, T. Torring, Z. Naturforsch. 25a, 35 (1970).nd remeasured by Evans and Gerry in 2000, C. J. Evans, M. C. L. Gerry, J. Chem. Phys. 112, 1321 (2000).as remeasured once more. We plan to produce H 2 AgBr, using laser ablation of a silver rod within a supersonic expansion of an argon carrier gas containing H 2 and CBr 2F 2. This is part of our ongoing study of hydrogen complexed with metal halides which include H 2 CuF, D. J. Frohman, G. S. Grubbs II, Z. Yu, S. E. Novick, Inorg. Chem. 52, 816 (2013).2 AgCl, G. S. Grubbs II, D. A. Obenchain, H. M. Pickett, S. E. Novick, J. Chem. Phys. 141, 114306 (2014).nd H 2 AuCl. D. A. Obenchain, G. S. Grubbs II, H. M. Pickett, S. E. Novick, J. Chem. Phys. 146, 204302 (2017).hese molecules are “models” of the molecular hydrogen storage in the cavities of metal organic frameworks (MOFs).
Footnotes:
J. Hoeft, F. J. Lovas, E. Tiemann, T. Torring, Z. Naturforsch. 25a, 35 (1970).a
C. J. Evans, M. C. L. Gerry, J. Chem. Phys. 112, 1321 (2000).w
D. J. Frohman, G. S. Grubbs II, Z. Yu, S. E. Novick, Inorg. Chem. 52, 816 (2013).H
G. S. Grubbs II, D. A. Obenchain, H. M. Pickett, S. E. Novick, J. Chem. Phys. 141, 114306 (2014).a
D. A. Obenchain, G. S. Grubbs II, H. M. Pickett, S. E. Novick, J. Chem. Phys. 146, 204302 (2017).T
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