RI. Mini-symposium: Synergy Between Experiment and Theory
Thursday, 2024-06-20, 01:45 PM
Roger Adams Lab 116
SESSION CHAIR: Kirill Prozument (Argonne National Laboratory, Lemont, IL)
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RI01 |
Invited Mini-Symposium Talk |
30 min |
01:45 PM - 02:15 PM |
P7882: LOOKING FOR UNKNOWN: FIRST PRINCIPLE SUPPORT FOR SPECTROSCOPIC EXPERIMENTS |
MALGORZATA BICZYSKO, College of Sciences, Shanghai University, Shanghai, China; |
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Molecular systems of increasing size and complexity from small prebiotic molecules of astrochemical interest [1], medium size chromophores important for technology applications [2] to larger bio-molecules such as proteins [3,4] are nowadays studied by broad range of experimental techniques, involving different parts of electromagnetic spectrum (see figure). However, it is seldom straightforward to link the rich experimental data to the desired information on the specific structure and properties of complex molecular systems. In this context there is increasing synergy between experiment and theory, exploiting methodological and technological advances on both sides.
I will discuss status and perspective of the project aimed at development, validation and application of QM based computational protocols supporting to decode and analyze experimental data based on light-matter interaction.
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Figure
[1] Y. Zhao, M. Hochlaf, M. Biczysko "Identification of DNA bases and their cations in Astrochemical environments: Computational spectroscopy of Thymine as a test case" Front. Astron. Space Sci. 8, 757007 (2021)
[2] X. Li, X. Yin, Y-L. Bai, M. Biczysko "Interpretation and prediction of optical properties: novel fluorescent dyes as a test case” Front. Phys. 11, 1236987 (2023)
[3] Y. Wang, H. Kruse, N.W. Moriarty, M.P. Waller, P.V. Afonine, M. Biczysko "Optimal clustering for quantum refinement of biomolecular structures: Q - R #4" Theo. Chem. Acc. 142, 100 (2023)
[4] Y. Liu, M. Biczysko, N.W. Moriarty "A radical approach to radicals" Acta Cryst. D78, 43-51 (2022)
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RI02 |
Contributed Talk |
15 min |
02:21 PM - 02:36 PM |
P7843: USING QUARTIC EXPANSIONS OF POTENTIALS DEVELOPED FOR VIBRATIONAL PERTURBATION THEORY CALCULATIONS TO EXPLORE SPECTRAL SIGNATURES OF LARGE AMPLITUDE VIBRATIONAL MOTIONS |
ANNE B. McCOY, Department of Chemistry, University of Washington, Seattle, WA, USA; |
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Second order vibrational perturbation theory has proved to be a powerful tool for calculating spectra for transitions that involve one or two quanta of excitation in small to moderate sized molecules and ions. As part of these calculations, the third and fourth derivatives of the potential with respect to the normal modes are evaluated numerically. In this talk, I will discuss several ways in which we can use this information to obtain additional insight into the spectrum. I will also discuss reasons why sometimes intensities obtained from VPT2 calculations may show signs of near degeneracies, while frequencies look reasonable, and strategies for correcting for these problematic intensities. The discussion will focus on recent studies in our group including work in our group, including studies of the pyrene anion, protonated water clusters, and complexes of Octamethyl Calix[4]Pyrrole with halide ions.
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RI03 |
Contributed Talk |
15 min |
02:39 PM - 02:54 PM |
P7820: USING GUIDED DIFFUSION MONTE CARLO (DMC) TO CALCULATE THE INTENSITIES OF VIBRATIONAL TRANSITIONS |
PATTARAPON MOONKAEN, ANNE B. McCOY, Department of Chemistry, University of Washington, Seattle, WA, USA; |
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Diffusion Monte Carlo (DMC) is a stochastic method that can be used to obtain the zero-point energy and the ground state wavefunction for a molecule of interest. The advantage of DMC is that it is general, and can produce accurate results even with molecules with highly anharmonic vibrations. The downside is that it is a ground state method, so we cannot obtain spectroscopic results. Also, even if we have the excited state information, calculating intensity of the transition is not straightforward since the wave function is represented by an ensemble of localized functions, the locations of which will be different for the ground and excited state.
Introducing a guiding function can help address both issues. We can use excited state guiding function to run guided DMC calculation and obtain the excited state information which is needed to evaluate the vibrational frequencies and intensities. Since we simulate the ground state and the excited state separately, the ground state and the excited state wave function will be sampled at different coordinates in space, so we cannot obtain the transition dipole moment from simple multiplication of these wave functions. In this talk, we will present two ways to calculate intensities of vibrational transitions. In the first, we use the fact that the guiding function should provide a good approximation to the wave function for the state of interest, and we can approximate the transition dipole matrix element which involves both ground state and excited state wave function by replacing one of the wave functions with the guiding function. In the second, we use descendant weighing to obtain the ratio of desired product of the ground and excited state wave function. We use these methods to calculate the vibrational frequencies and intensities of several small molecules including H2O, H3O2− and H5O2+, and explore the advantages and disadvantages of the two approaches.
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RI04 |
Contributed Talk |
15 min |
02:57 PM - 03:12 PM |
P7822: USING VIBRATIONAL PERTURBATION THEORY TO GAIN INSIGHT INTO THE IR SPECTRUM OF SYN-METHYL-SUBSITUTED CRIEGEE |
MEIJUN ZOU, Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA; YARRA HASSAN, Department of Chemistry, University of Washington, Seattle, WA, USA; TARUN KUMAR ROY, Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA; ANNE B. McCOY, Department of Chemistry, University of Washington, Seattle, WA, USA; MARSHA I LESTER, Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA; |
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Criegee intermediates play an important role in the lower levels of the atmosphere, as they provide a non-photolytic source of OH radicals. In this work we re-examined the vibrational spectrum of methyl-Criegee (CH3C=OO +) in the CH-stretching overtone region (2νCH) after the development of a new experimental method known as IR VUV ion-dip spectroscopy. By utilizing a general implementation of vibrational perturbation theory (VPT) [1,2], we gain insights into the motions responsible for the peaks in the experimental spectrum. We find that after shifting the harmonic frequencies based on differences between experiment and the calculated spectrum in the fundamental CH-stretching region, we can achieve excellent agreement between experiment and the VPT2 spectrum. This empirical approach was implemented using three different levels of electronic structure theory/basis sets: B2PLYP-D3/cc-pVTZ, B3LYP/aug-cc-pVTZ, and MP2/aug-cc-pVTZ. For all levels of electronic structure theory, the resulting spectra are virtually indistinguishable from each other, illustrating the robustness of this approach.
References:
Boyer, M. A.; McCoy, A. B. A flexible approach to vibrational perturbation theory using sparse matrix methods. The Journal of Chemical Physics 2022, 156, 054107.
Boyer, M. A.; McCoy, A. B. A wave function correction-based approach to the identification of resonances for vibrational perturbation theory. The Journal of Chemical Physics 2022, 157, 164113.
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RI05 |
Contributed Talk |
15 min |
03:15 PM - 03:30 PM |
P7447: MILLIMETER-WAVE AND HIGH-RESOLUTION INFRARED SPECTROSCOPY OF THE LOW-LYING VIBRATIONALLY EXCITED STATES OF PYRIDAZINE ISOTOPOLOGUES |
BRIAN J. ESSELMAN, MARIA ZDANOVSKAIA, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; BRENT K. AMBERGER, Department of Chemistry, University of Wisconsin, Madison, WI, USA; JOSHUA DAVID SHUTTER, ANDREW N. OWEN, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; BRANT E. BILLINGHURST, JIANBAO ZHAO, Materials and Chemical Sciences Division, Canadian Light Source Inc., Saskatoon, Saskatchewan, Canada; ZBIGNIEW KISIEL, ON2, Institute of Physics, Polish Academy of Sciences, Warszawa, Poland; R. CLAUDE WOODS, ROBERT J. McMAHON, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; |
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The gas-phase rotational spectrum from 8 to 750 GHz and the high-resolution infrared spectrum of pyridazine (o-C4H4N2) have been analyzed for the ground and four lowest-energy vibrationally excited states. A combined global fit of the rotational and infrared data has been obtained using a sextic, centrifugally distorted rotor Hamiltonian with Coriolis coupling between appropriate states. For the first time, the Coriolis coupling has been addressed in the two lowest-energy coupled dyads (ν16, ν13 and ν24, ν9). Utilizing the Coriolis coupling between the vibrational states of each dyad and the analysis of the infrared spectrum for ν16 and ν9, we have determined precise band origins for each of these fundamental states: ν16 (B1) = 361.2132927 (17) cm−1, ν13 (A2) = 361.2840824 (17) cm−1, ν24 (B2) = 618.969096 (26) cm−1, and ν9 (A1) = 664.7233784 (27) cm−1. Notably, the energy separation in the ν16-ν24 Coriolis-coupled dyad is one of the smallest spectroscopically measured energy separations between vibrational states: only 2122.222 (72) MHz or 0.0707897 (24) cm−1. Additionally, the spectra of pyridazine-dx isotopologues generated for a previous semi-experimental equilibrium (reSE) structure determination allowed us to analyze the two lowest-energy vibrational states of pyridazine for all pyridazine-dx isotopologues. Six of these formed coupled dyads, while three were amenable to fitting with single-state Hamiltonians. Spectroscopic constants and energy differences determined in this work are compared to their CCSD(T)/cc-pCVTZ computed values.
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03:33 PM |
INTERMISSION |
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RI06 |
Contributed Talk |
15 min |
04:10 PM - 04:25 PM |
P7741: A THEORETICAL STUDY OF THE TRANSITION METAL CATION-π SYSTEMS: NI+, PD+, and PT+ WITH ACETYLENE |
JINCAN JIN, MICHAEL A DUNCAN, HENRY F. SCHAEFER III., Department of Chemistry, University of Georgia, Athens, GA, USA; |
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Group 10 element cation(Ni+, Pd+, Pt+) interactions with acetylene are studied with high-level ab initio quantum mechanical methods. Geometries were optimized with the CCSD(T) method with the cc-pVTZ-PP and aug-cc-pVTZ-PP basis sets with small core pseudopotentials. Harmonic vibrational frequencies were computed with the same level of theory to compare to the experimental IR photodissociation spectrum measured via argon tagging. The binding energies were determined at the CCSD(T)/CBS level of theory via the Focal Point Analysis method with harmonic zero-point vibrational energy corrections.
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RI07 |
Contributed Talk |
15 min |
04:28 PM - 04:43 PM |
P7565: ADDRESSING DISCREPANCIES BETWEEN THEORY AND EXPERIMENT IN THE NF3 PHOTOELECTRON SPECTRUM |
MEGAN R. BENTLEY, Chemistry, University of Florida, Gainesville, FL, USA; PETER R. FRANKE, KAILA E. WEFLEN, Department of Chemistry, University of Florida, Gainesville, FL, USA; BRANKO RUSCIC, Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA; JOHN F. STANTON, Quantum Theory Project, University of Florida, Gainesville, FL, USA; |
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Due to a large change in geometry upon ionization of NF3, the corresponding photoelectron spectrum observed by Berkowitz and Greene exhibits a long vibrational progression spanning roughly 1.5 eV. The ionization threshold is assigned at 13.0 eV, consistent with previous experimental determinations but at considerable odds with mid-level calculations which predict an ionization energy nearly 0.4 eV lower. We perform high-accuracy thermochemical calculations (HEAT) to determine the ionization threshold and find it is consistent with previously calculated estimates, a fact which is not entirely surprising given the difficulty in determining the onset experimentally due to small Franck-Condon factors in the vicinity of the origin in ionization processes associated with a significant geometry change. More interestingly, the width of the overall progression is enough to surmount the barrier to planarity in NF3+, assigned experimentally to an observed change in vibrational spacing on either side of the peak maximum. Again, high-accuracy calculations determine a value much lower in energy (0.24 eV) than that predicted by experiment, throwing into question the explanation for the change (or loss) of observed spacing on the higher energy side of the peak maximum. Attempts to alleviate discrepancies between calculated and experimental assignments, relying on the aforementioned thermochemical calculations and Franck-Condon simulations are discussed.
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RI08 |
Contributed Talk |
15 min |
04:46 PM - 05:01 PM |
P7366: UNRAVELLING THE OH STRETCH SPECTRUM OF FORMIC ACID |
ARMAN NEJAD, Department of Chemistry, Oxford University, Oxford, United Kingdom; GUSTAVO AVILA, EDIT MÁTYUS, Institute of Chemistry, Eötvös Loránd University, Budapest, Hungary; EDWIN SIBERT, Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; |
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Recent combined multi-experimental and theoretical vibrational spectroscopic efforts have tremendously contributed to and extended our understanding of the internal dynamics of formic acid (HCOOH), the smallest carboxylic acid. A. K. Kelemen and S. Luber, Phys. Chem. Chem. Phys. 2022, 24, 28109.ne important result is that the well-known ν 5-2ν 9 OH bend-torsion Fermi resonance plays a far more important role than previously believed. A. Nejad and E. L. Sibert III, J Chem. Phys. 2021, 154, 064301.he OH stretch has long been known to be strongly perturbed by several resonances, leading to a significant intensity redistribution. However, the analysis of its rotationally-resolved spectrum was achieved only as recently as 2023, Y.-C. Chan and D. J. Nesbitt, J. Mol. Spectrosc. 2023, 392, 111743.lmost two decades after its first measurement. Hurtmans et al., J. Chem. Phys. 2000, 113, 1535.sing high-level full-dimensional perturbative (Canonical Van Vleck) and variational (GENIUSH-Smolyak) vibrational models in combination with full-dimensional potential energy and property surfaces, it is found that the perturbers belong to a large network of coupled vibrational states that build on the well-known ν 5-2ν 9 Fermi resonance. Many of the observed OH stretch perturbers are highly-excited multi-quantum vibrational states (n ≥ 3) so that normal mode labels become inadequate to properly label the bands. The question arises of how - if at all - the interaction can be understood in chemical bonding terms which is addressed in light of the underlying OH bend-torsion ν 5-2ν 9 Fermi resonance.
Footnotes:
A. K. Kelemen and S. Luber, Phys. Chem. Chem. Phys. 2022, 24, 28109.O
A. Nejad and E. L. Sibert III, J Chem. Phys. 2021, 154, 064301.T
Y.-C. Chan and D. J. Nesbitt, J. Mol. Spectrosc. 2023, 392, 111743.a
Hurtmans et al., J. Chem. Phys. 2000, 113, 1535.U
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RI09 |
Contributed Talk |
15 min |
05:04 PM - 05:19 PM |
P7501: DETERMINATION OF THE ν3 FUNDAMENTAL FREQUENCY OF NO3 VIA HIGH-RESOLUTION PHOTOELECTRON SPECTROSCOPY OF VIBRATIONALLY EXCITED NO3− |
JASCHA A. LAU, MARTIN DeWITT, Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA; PETER R. FRANKE, Department of Chemistry, University of Florida, Gainesville, FL, USA; JOHN F. STANTON, Quantum Theory Project, University of Florida, Gainesville, FL, USA; DANIEL NEUMARK, Department of Chemistry, The University of California, Berkeley, CA, USA; |
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The nitrate radical ( NO3) may have been one of the first radicals spectroscopically detected [1]. Nevertheless, the spectroscopy of its X 2A 2′ electronic ground state is extremely complex, largely due to extensive vibronic coupling with and within the B 2E ′ excited state. Vibronic coupling models predict the rather unintuitive result that the fundamental of the degenerate N-O stretching mode (ν 3) has negligible IR intensity and is located near 1050 cm−1 [2]. A strongly IR-active feature at 1492 cm−1, which was originally assigned to the ν 3 fundamental [3], is then attributed to the ν 3+ν 4 combination band. This reassignment has resulted in a long-lasting and still ongoing controversy about the correct ν 3 frequency [4].
Here, we use the IR-cryo-SEVI technique, which was only recently extended to polyatomic molecules [5], to record high-resolution photoelectron spectra of vibrationally excited NO3−. By selectively exciting the ν 3 and 2ν 3 levels with an infrared laser prior to photodetachment, additional transitions involving the ν 3 mode can be observed that do not appear in the photoelectron spectra of vibrationally cold NO3− [6]. The resulting IR-cryo-SEVI spectra are in excellent agreement with simulations predicted by the vibronic coupling model. Most importantly, we observe a feature that-even without the help of theory-clearly indicates a ν 3 fundamental frequency close to 1050 cm−1.
[1] J. Chappuis, Ann. Sci. Ec. Norm. Super. 11, 137-186 (1882).
[2] J. F. Stanton, Mol. Phys. 107, 1059-1075 (2009).
[3] T. Ishiwata et al., J. Chem. Phys. 82, 2196-2205 (1985).
[4] M. Fukushima, J. Mol. Spectrosc. 387, 111646 (2022).
[5] J. A. Lau, M. DeWitt, et al., J. Phys. Chem. A 127, 3133-3147 (2023).
[6] M. C. Babin et al., J. Phys. Chem. Lett. 11, 395-400 (2020).
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